STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ74478.1Sugar phosphate isomerase/epimerase. (304 aa)    
Predicted Functional Partners:
SKA10665.1
Predicted dehydrogenase.
  
 
 0.902
SJZ74506.1
Putative nucleotidyltransferase DUF294.
 
     0.835
SJZ74574.1
Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.819
SJZ38296.1
Sugar or nucleoside kinase, ribokinase family.
  
 
 0.796
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 
     0.787
SJZ74458.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.781
SJZ74614.1
Protein of unknown function.
       0.773
SKA16690.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
    
  0.756
SJZ96481.1
Chorismate mutase.
     
 0.737
SJZ50581.1
Putative zinc-or iron-chelating domain-containing protein.
  
     0.731
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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