STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ74817.1Hypothetical protein. (542 aa)    
Predicted Functional Partners:
SKA16078.1
Chaperone of endosialidase.
 
 0.716
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.695
SJZ80680.1
Cellobiose phosphorylase.
     
 0.671
SJZ74782.1
Listeria/Bacterioides repeat-containing protein.
  
 
 0.609
SJZ74833.1
Listeria/Bacterioides repeat-containing protein.
  
 
  0.604
SJZ61534.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.601
SJZ39081.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
  
    0.522
SJZ60343.1
PAS domain S-box-containing protein.
  
  
 0.419
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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