STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ78049.1Methyl-accepting chemotaxis sensory transducer with Cache sensor. (546 aa)    
Predicted Functional Partners:
SJZ60813.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.971
SJZ50125.1
CheA signal transduction histidine kinase.
 
 0.966
SJZ60343.1
PAS domain S-box-containing protein.
  
 0.966
SJZ72319.1
CheW protein.
 
 0.962
SJZ66209.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.961
SKA05661.1
CheW protein.
 
 0.960
SJZ96899.1
Purine-binding chemotaxis protein CheW.
 
 0.951
SJZ33843.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.944
SJZ72327.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.944
SJZ96847.1
CheA signal transduction histidine kinase.
 
 0.944
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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