STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ79902.1Calpain family cysteine protease. (365 aa)    
Predicted Functional Partners:
SJZ79928.1
NlpC/P60 family protein.
       0.768
SJZ61534.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
     
 0.762
SJZ33461.1
Flagellar motor switch protein FliN/FliY.
   
 
 0.691
SJZ89154.1
Iron complex outermembrane recepter protein.
    
 
 0.691
SKA15246.1
Iron complex outermembrane recepter protein.
    
 
 0.691
SJZ79960.1
Hypothetical protein.
       0.681
SJZ79795.1
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
    
 0.669
SJZ96273.1
Competence protein ComEC.
  
  
 0.653
SJZ79776.1
Membrane-bound lysozyme-inhibitor of c-type lysozyme.
    
 0.638
SJZ60571.1
Conserved repeat domain-containing protein.
  
 0.617
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.