STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ82823.1Prepilin-type N-terminal cleavage/methylation domain-containing protein. (216 aa)    
Predicted Functional Partners:
SKA23105.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
 
 0.697
SJZ82666.1
General secretion pathway protein E.
 
 0.679
SJZ96273.1
Competence protein ComEC.
  
  
 0.667
SJZ82601.1
MSHA biogenesis protein MshL; Belongs to the bacterial secretin family.
 
  
 0.663
SKA09131.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 0.645
SKA17351.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 0.640
SJZ59718.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
  
 0.637
SJZ78137.1
Type IV pilus assembly protein PilB.
  
 0.637
SJZ79997.1
General secretion pathway protein E.
  
 0.637
SJZ82846.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.637
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.