STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ98279.1LysM domain-containing protein. (446 aa)    
Predicted Functional Partners:
SKA19567.1
L,D-transpeptidase catalytic domain.
 
  
 0.700
SJZ92397.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.547
SJZ98297.1
Penicillin-binding protein 1A.
     
 0.521
SJZ99377.1
Peptidoglycan synthetase FtsI.
     
 0.519
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
 0.493
SJZ40806.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.484
SJZ77595.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.484
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
    
  0.475
SJZ77511.1
Peptidoglycan glycosyltransferase.
     
 0.472
SJZ82281.1
Penicillin binding protein transpeptidase domain-containing protein.
     
 0.472
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.