STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ98368.1Anti-sigma regulatory factor (Ser/Thr protein kinase). (141 aa)    
Predicted Functional Partners:
SJZ98354.1
Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
 
 0.991
SJZ78669.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
 
 0.962
SJZ79137.1
Stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
 
 0.961
SJZ79627.1
Serine phosphatase.
 0.957
SJZ99240.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 0.947
SJZ77998.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.905
SJZ97177.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.886
SJZ97196.1
Serine phosphatase.
 
 0.880
SJZ50093.1
ABC-type transporter Mla maintaining outer membrane lipid asymmetry, MlaB component, contains STAS domain.
  
 0.832
SJZ95914.1
Anti-anti-sigma factor.
  
 0.832
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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