STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ99998.1Inner membrane protein. (441 aa)    
Predicted Functional Partners:
SJZ53509.1
Uncharacterized membrane protein.
  
     0.705
SKA00025.1
Signal transduction histidine kinase.
 
     0.672
SKA00010.1
Two-component system, OmpR family, response regulator.
     
 0.520
SJZ39040.1
Transcriptional regulatory protein RtcR.
  
     0.495
SJZ33039.1
4-amino-4-deoxy-L-arabinose transferase.
   
    0.485
SJZ40891.1
Hypothetical protein.
  
     0.421
SJZ37978.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
  
     0.414
SJZ40948.1
Protein of unknown function.
  
     0.408
SJZ38972.1
tRNA-splicing ligase RtcB.
  
     0.401
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.