STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA01392.1Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (388 aa)    
Predicted Functional Partners:
SJZ50886.1
Nitrogen fixation protein NifU.
 
 0.999
SKA01414.1
NifU-like protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.999
SJZ56810.1
NifU homolog involved in Fe-S cluster formation.
  
 0.966
SJZ59990.1
Molybdopterin or thiamine biosynthesis adenylyltransferase.
   
 0.952
SJZ35653.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
 
 0.908
SJZ83078.1
Transcriptional regulator, BadM/Rrf2 family.
  
 
 0.898
SKA09991.1
Selenophosphate synthase.
   
 0.895
SJZ94307.1
Transcriptional regulator, BadM/Rrf2 family.
  
 
 0.892
SKA10015.1
3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.
  
 0.884
SKA12155.1
3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.
  
 0.884
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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