STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA01519.1Outer membrane protein TolC. (497 aa)    
Predicted Functional Partners:
SJZ34961.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.975
SJZ34957.1
Multidrug efflux pump.
 
 0.972
SKA16726.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.934
SJZ88351.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.907
SJZ92463.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.866
macB-2
Macrolide transport system ATP-binding/permease protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 0.843
SJZ88398.1
Outer membrane protein, multidrug efflux system.
     
 0.840
SKA16709.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.831
SJZ88370.1
Multidrug efflux pump.
 
 0.830
SJZ92472.1
Hydrophobic/amphiphilic exporter-1, HAE1 family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.830
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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