STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA04895.1Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family. (321 aa)    
Predicted Functional Partners:
SKA04858.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 0.999
SKA04880.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
 
 0.999
SKA04921.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
SKA04941.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.998
SKA04968.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.995
SJZ66788.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.990
SJZ99172.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
  
 0.954
SKA21887.1
Lipopolysaccharide export system ATP-binding protein.
 
      0.900
SJZ62537.1
ABC-2 type transport system ATP-binding protein.
   
 0.898
SJZ39081.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
   
  0.856
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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