Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA05210.1 | SKA05222.1 | SAMN02745119_02471 | SAMN02745119_02472 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Hypothetical protein. | 0.789 |
SKA05210.1 | SKA05259.1 | SAMN02745119_02471 | SAMN02745119_02473 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Creatinine amidohydrolase. | 0.773 |
SKA05210.1 | SKA05292.1 | SAMN02745119_02471 | SAMN02745119_02475 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | preQ(0) biosynthesis protein QueD. | 0.778 |
SKA05210.1 | SKA05307.1 | SAMN02745119_02471 | SAMN02745119_02476 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Diguanylate cyclase with GAF sensor. | 0.714 |
SKA05210.1 | dut | SAMN02745119_02471 | SAMN02745119_02479 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.453 |
SKA05210.1 | queE | SAMN02745119_02471 | SAMN02745119_02474 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.776 |
SKA05222.1 | SKA05210.1 | SAMN02745119_02472 | SAMN02745119_02471 | Hypothetical protein. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.789 |
SKA05222.1 | SKA05259.1 | SAMN02745119_02472 | SAMN02745119_02473 | Hypothetical protein. | Creatinine amidohydrolase. | 0.773 |
SKA05222.1 | SKA05292.1 | SAMN02745119_02472 | SAMN02745119_02475 | Hypothetical protein. | preQ(0) biosynthesis protein QueD. | 0.773 |
SKA05222.1 | SKA05307.1 | SAMN02745119_02472 | SAMN02745119_02476 | Hypothetical protein. | Diguanylate cyclase with GAF sensor. | 0.705 |
SKA05222.1 | dut | SAMN02745119_02472 | SAMN02745119_02479 | Hypothetical protein. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.418 |
SKA05222.1 | queE | SAMN02745119_02472 | SAMN02745119_02474 | Hypothetical protein. | Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.773 |
SKA05259.1 | SKA05210.1 | SAMN02745119_02473 | SAMN02745119_02471 | Creatinine amidohydrolase. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.773 |
SKA05259.1 | SKA05222.1 | SAMN02745119_02473 | SAMN02745119_02472 | Creatinine amidohydrolase. | Hypothetical protein. | 0.773 |
SKA05259.1 | SKA05292.1 | SAMN02745119_02473 | SAMN02745119_02475 | Creatinine amidohydrolase. | preQ(0) biosynthesis protein QueD. | 0.812 |
SKA05259.1 | SKA05307.1 | SAMN02745119_02473 | SAMN02745119_02476 | Creatinine amidohydrolase. | Diguanylate cyclase with GAF sensor. | 0.705 |
SKA05259.1 | dut | SAMN02745119_02473 | SAMN02745119_02479 | Creatinine amidohydrolase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.418 |
SKA05259.1 | queE | SAMN02745119_02473 | SAMN02745119_02474 | Creatinine amidohydrolase. | Organic radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.823 |
SKA05292.1 | SKA05210.1 | SAMN02745119_02475 | SAMN02745119_02471 | preQ(0) biosynthesis protein QueD. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.778 |
SKA05292.1 | SKA05222.1 | SAMN02745119_02475 | SAMN02745119_02472 | preQ(0) biosynthesis protein QueD. | Hypothetical protein. | 0.773 |
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