STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA08344.1Outer membrane protein W. (203 aa)    
Predicted Functional Partners:
SKA08365.1
Hypothetical protein.
       0.718
SJZ84839.1
Glutamate synthase (NADH) large subunit.
    
  0.646
SKA20216.1
polyphosphate:AMP phosphotransferase.
   
    0.526
SJZ94032.1
Coproporphyrinogen III oxidase, anaerobic; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.490
SKA08398.1
Hypothetical protein.
       0.486
SKA08410.1
Glycine-zipper containing OmpA-like membrane domain-containing protein.
       0.480
SKA08333.1
Hypothetical protein.
       0.467
SKA08317.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
       0.405
SKA08299.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
    0.400
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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