STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA10004.1Selenophosphate synthase. (144 aa)    
Predicted Functional Partners:
SKA09991.1
Selenophosphate synthase.
     0.994
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.935
SJZ57094.1
tRNA 2-selenouridine synthase; Belongs to the SelU family.
 
  
 0.847
SKA07955.1
Cysteine desulfurase family protein.
 
  
 0.793
SJZ34302.1
Thioredoxin reductase (NADPH).
     
 0.740
SJZ36679.1
Selenocysteine-specific translation elongation factor SelB.
 
   
 0.725
SJZ78391.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
   
 0.670
SKA09944.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
   
 0.655
SKA10015.1
3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.
    
 0.650
SKA12155.1
3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.
    
 0.650
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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