Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ51075.1 | SKA12333.1 | SAMN02745119_00831 | SAMN02745119_02749 | Agmatine deiminase; Belongs to the agmatine deiminase family. | Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. | 0.466 |
SJZ51075.1 | speA | SAMN02745119_00831 | SAMN02745119_02751 | Agmatine deiminase; Belongs to the agmatine deiminase family. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.983 |
SKA02590.1 | speA | SAMN02745119_02385 | SAMN02745119_02751 | Ca2+-binding protein, EF-hand superfamily. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.474 |
SKA04443.1 | SKA21328.1 | SAMN02745119_02438 | SAMN02745119_03166 | [Acyl-carrier-protein] S-malonyltransferase. | Malonyl CoA-acyl carrier protein transacylase. | 0.969 |
SKA04443.1 | speA | SAMN02745119_02438 | SAMN02745119_02751 | [Acyl-carrier-protein] S-malonyltransferase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.515 |
SKA12333.1 | SJZ51075.1 | SAMN02745119_02749 | SAMN02745119_00831 | Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. | Agmatine deiminase; Belongs to the agmatine deiminase family. | 0.466 |
SKA12333.1 | SKA12342.1 | SAMN02745119_02749 | SAMN02745119_02750 | Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. | Carboxynorspermidine dehydrogenase. | 0.961 |
SKA12333.1 | argH | SAMN02745119_02749 | SAMN02745119_01146 | Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. | Argininosuccinate lyase. | 0.476 |
SKA12333.1 | speA | SAMN02745119_02749 | SAMN02745119_02751 | Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.744 |
SKA12342.1 | SKA12333.1 | SAMN02745119_02750 | SAMN02745119_02749 | Carboxynorspermidine dehydrogenase. | Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. | 0.961 |
SKA12342.1 | pnp | SAMN02745119_02750 | SAMN02745119_02752 | Carboxynorspermidine dehydrogenase. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.517 |
SKA12342.1 | speA | SAMN02745119_02750 | SAMN02745119_02751 | Carboxynorspermidine dehydrogenase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.851 |
SKA21328.1 | SKA04443.1 | SAMN02745119_03166 | SAMN02745119_02438 | Malonyl CoA-acyl carrier protein transacylase. | [Acyl-carrier-protein] S-malonyltransferase. | 0.969 |
SKA21328.1 | speA | SAMN02745119_03166 | SAMN02745119_02751 | Malonyl CoA-acyl carrier protein transacylase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.485 |
argH | SKA12333.1 | SAMN02745119_01146 | SAMN02745119_02749 | Argininosuccinate lyase. | Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. | 0.476 |
argH | speA | SAMN02745119_01146 | SAMN02745119_02751 | Argininosuccinate lyase. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.965 |
pnp | SKA12342.1 | SAMN02745119_02752 | SAMN02745119_02750 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Carboxynorspermidine dehydrogenase. | 0.517 |
pnp | speA | SAMN02745119_02752 | SAMN02745119_02751 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.528 |
rpmH | rpsT | SAMN02745119_00404 | SAMN02745119_02182 | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.990 |
rpmH | speA | SAMN02745119_00404 | SAMN02745119_02751 | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. | 0.438 |
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