STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA13528.1LemA protein. (194 aa)    
Predicted Functional Partners:
SKA13515.1
Uncharacterized protein.
 
  
 0.956
SKA13550.1
MtN3 and saliva related transmembrane protein.
  
    0.810
trmJ
tRNA/rRNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
       0.778
SKA13591.1
Hypothetical protein.
       0.723
SKA13501.1
Hypothetical protein.
       0.553
SKA13472.1
Hypothetical protein.
       0.539
SKA13487.1
Hypothetical protein.
       0.539
SKA13458.1
Hypothetical protein.
       0.474
SKA13614.1
Tetratricopeptide repeat-containing protein.
       0.468
SKA13446.1
Hypothetical protein.
       0.416
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.