STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA16392.1Membrane protein YqaA, SNARE-associated domain. (162 aa)    
Predicted Functional Partners:
SKA16367.1
Proteasome accessory factor B.
       0.555
SKA16404.1
Hypothetical protein.
       0.541
SKA16407.1
mRNA interferase MazF; Toxic component of a type II toxin-antitoxin (TA) system.
       0.541
SKA16458.1
Hypothetical protein.
       0.503
SKA18297.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
    0.503
SJZ71036.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
    0.452
SKA16342.1
Putative hydrolase of the HAD superfamily.
       0.429
SKA16352.1
SAM-dependent methyltransferase, MidA family.
       0.429
SJZ83886.1
Protein of unknown function.
  
     0.420
SKA16471.1
Prophage antirepressor.
       0.417
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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