STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA17400.1MFS transporter, DHA2 family, multidrug resistance protein; Belongs to the major facilitator superfamily. (519 aa)    
Predicted Functional Partners:
SKA17394.1
Membrane fusion protein, multidrug efflux system.
 0.995
SKA17385.1
Outer membrane protein TolC; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 
 0.833
SKA17376.1
Transcriptional regulator, MarR family.
 
   
 0.804
SJZ96637.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.618
SJZ62527.1
HlyD family secretion protein.
 
 0.540
SKA17359.1
Hypothetical protein.
    
 0.530
SKA02707.1
Acyl transferase domain-containing protein.
   
 0.506
SJZ96481.1
Chorismate mutase.
  
 
 0.505
SKA17351.1
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB.
     
 0.497
SKA17368.1
Hypothetical protein.
       0.492
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.