STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA17487.1Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. (742 aa)    
Predicted Functional Partners:
SKA17409.1
2-oxoglutarate ferredoxin oxidoreductase, gamma subunit.
  
 
 0.998
SKA17416.1
2-oxoglutarate ferredoxin oxidoreductase, beta subunit.
  
 
 0.998
SKA17427.1
2-oxoglutarate ferredoxin oxidoreductase, alpha subunit.
  
 
 0.998
SJZ41627.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.995
SKA07817.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.989
SKA09496.1
Aconitase; Belongs to the aconitase/IPM isomerase family.
  
 
 0.981
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.981
SKA07799.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
  
 
 0.980
SJZ84839.1
Glutamate synthase (NADH) large subunit.
     
 0.978
SKA02336.1
4Fe-4S dicluster domain-containing protein.
  
 
 0.975
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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