STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA18215.1HAMP domain-containing protein. (676 aa)    
Predicted Functional Partners:
SJZ60343.1
PAS domain S-box-containing protein.
 
 0.966
SJZ66209.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.961
SJZ60813.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.929
SJZ33843.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.925
SJZ72327.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.925
SJZ96847.1
CheA signal transduction histidine kinase.
 
 0.925
SJZ95889.1
CheA signal transduction histidine kinase.
 
 0.923
SJZ50125.1
CheA signal transduction histidine kinase.
 
 0.921
SJZ80743.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.913
SJZ83937.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.912
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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