STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA20180.1LysM domain-containing protein. (347 aa)    
Predicted Functional Partners:
SJZ65065.1
Phosphate binding protein.
  
 0.838
SJZ48006.1
Cell wall-associated hydrolase, NlpC family.
 
 
0.816
SKA23006.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
 
 0.784
SJZ99114.1
beta-N-acetylhexosaminidase.
    
 0.780
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
 0.776
SJZ92397.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.738
SJZ61534.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
  0.732
SJZ82281.1
Penicillin binding protein transpeptidase domain-containing protein.
 
 0.728
SJZ35306.1
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
 
 
 0.705
SKA16295.1
Penicillin-binding protein, 1A family.
 
 
 0.700
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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