STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA20196.1Radical SAM superfamily enzyme YgiQ, UPF0313 family. (518 aa)    
Predicted Functional Partners:
SKA06159.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
  
 
0.720
SJZ57320.1
Regulatory protein, Fis family.
  
 
 0.665
SJZ38327.1
Hypothetical protein.
  
 
 0.650
SKA02401.1
Hypothetical protein.
  
 
 0.643
SKA20216.1
polyphosphate:AMP phosphotransferase.
   
    0.516
SJZ68075.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
  
 
0.507
SJZ62869.1
Hopanoid biosynthesis associated radical SAM protein HpnJ.
  
  
 
0.501
SJZ61185.1
Ceramide glucosyltransferase.
   
 0.443
SKA20180.1
LysM domain-containing protein.
       0.431
SJZ65978.1
Uncharacterized protein.
 
  
 0.430
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.