STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA21242.1Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily. (278 aa)    
Predicted Functional Partners:
SJZ80680.1
Cellobiose phosphorylase.
  
 
 0.865
SKA21256.1
Glycosyl transferase family 2.
  
 
 0.838
SKA21280.1
Acyl carrier protein.
     
 0.758
SKA21273.1
KDO2-lipid IV(A) lauroyltransferase.
       0.757
SKA21265.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
       0.752
SKA21288.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
 
    0.744
SJZ89772.1
Hypothetical protein.
  
 
 0.718
SKA21341.1
acyl-CoA thioester hydrolase.
  
  
 0.715
SKA21328.1
Malonyl CoA-acyl carrier protein transacylase.
       0.703
SKA21351.1
Radical SAM superfamily enzyme YgiQ, UPF0313 family.
  
    0.703
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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