STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA23962.1Transferase 2, rSAM/selenodomain-associated. (225 aa)    
Predicted Functional Partners:
SKA23917.1
Hypothetical protein.
   
 0.986
SKA23974.1
PAS domain S-box-containing protein.
  
 
 0.801
SJZ45634.1
Radical SAM/Cys-rich domain-containing protein.
 
     0.790
SKA23999.1
Phosphonate transport system substrate-binding protein.
  
    0.781
SJZ45594.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
 
   
 0.773
SKA09930.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
 
   
 0.771
SKA10779.1
Glycosyltransferase, GT2 family.
  
 
 0.748
SJZ45548.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
 
   
 0.661
SKA09729.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
 
   
 0.642
SKA02186.1
Uncharacterized conserved protein, DUF1499 family.
 
     0.600
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.