STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APU24841.1Carotenoid oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
APU27737.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
APU25059.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.660
APU25079.1
Hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.640
APU25874.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.639
mkl
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.603
gmk
Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.601
PE_PGRS20
PE-PGRS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.589
APU26224.1
Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.587
lpqL
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.571
APU25828.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.571
Your Current Organism:
Mycobacterium tuberculosis variant caprae
NCBI taxonomy Id: 115862
Other names: ATCC BAA-824, CIP 105776, M. tuberculosis variant caprae, Mycobacterium bovis subsp. caprae, Mycobacterium caprae, Mycobacterium tuberculosis subsp. caprae, strain gM-1, strain spc-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.