STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_8089Carotenoid cleavage dioxygenase 1. (578 aa)    
Predicted Functional Partners:
UV8b_7891
26S proteasome non-ATPase regulatory subunit 12.
 
      0.837
UV8b_8276
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.823
UV8b_6001
Squalene synthase.
     
 0.727
UV8b_4026
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.711
UV8b_4641
Putative oxidoreductase,short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.680
UV8b_6571
Squalene phytoene synthase.
     
 0.633
UV8b_5870
Putative transcription factor G6G8.4.
   
 
 0.628
UV8b_2976
Putative diacylglycerol acyltransferase type 2a.
   
 
 0.621
UV8b_467
Xanthine dehydrogenase.
     
 0.609
UV8b_468
Xanthine dehydrogenase.
     
 0.609
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.