STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_7938CCR4-NOT transcription complex. (628 aa)    
Predicted Functional Partners:
UV8b_6306
Putative Ccr4-Not transcription complex subunit (NOT1).
    
 0.994
UV8b_3765
Cell differentiation protein rcd1.
    
 0.994
UV8b_1226
CCR4-NOT transcription complex subunit 7.
    
 0.988
UV8b_4938
General negative regulator of transcription subunit 4.
   
 0.983
UV8b_7637
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 0.978
UV8b_5853
Topoisomerase II-associated protein PAT1.
   
 
 0.963
UV8b_4266
Leucine rich repeat domain protein.
    
 0.962
UV8b_6365
ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.
   
 0.952
UV8b_8032
Exosomal core protein CSL4.
    
 
 0.911
UV8b_941
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.907
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.