STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_7729Uncharacterized protein. (320 aa)    
Predicted Functional Partners:
UV8b_2137
Putative ribosome biogenesis protein (Bms1).
   
   0.987
UV8b_3664
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 
 0.975
UV8b_1658
Sas10/Utp3/C1D family protein.
   
 
 0.967
UV8b_5709
U3 small nucleolar RNA-associated protein 5.
   
   0.964
UV8b_5176
Small nucleolar ribonucleoprotein complex subunit Utp14, putatrive.
   
 
 0.962
UV8b_1248
Sas10/Utp3 family protein.
   
   0.961
UV8b_3017
U3 small nucleolar ribonucleoprotein IMP4.
   
 
 0.960
UV8b_4330
WD domain, G-beta repeat containing protein.
  
   0.949
UV8b_837
Uncharacterized protein.
   
   0.949
UV8b_6337
WD repeat protein.
   
   0.948
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.