STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6441RNA polymerase II transcription factor related protein. (646 aa)    
Predicted Functional Partners:
UV8b_7408
DNA repair helicase RAD25.
   
 0.999
UV8b_6450
DNA repair helicase RAD3.
    
 0.999
UV8b_5181
Putative transcription factor TFIIH subunit Tfb4.
    
 0.999
UV8b_3711
RNA polymerase ii transcription factor b subunit 5.
    
 0.995
UV8b_2125
CDK-activating kinase assembly factor MAT1.
    
 0.994
UV8b_353
Transcription factor spTFIIE alpha subunit.
   
 0.994
UV8b_1433
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.991
UV8b_1147
Cyclin CCL1.
    
 0.988
UV8b_917
DNA excision repair protein Rad2.
    
 0.986
UV8b_7135
Serine/threonine-protein kinase; Belongs to the protein kinase superfamily.
    
 0.981
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.