STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6294Uncharacterized protein. (273 aa)    
Predicted Functional Partners:
UV8b_7513
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
   
 0.978
UV8b_7851
Transcription initiation factor TFIID subunit 9.
   
 0.978
UV8b_7657
Putative transcription initiation factor TFIID 100Kda.
    
 0.978
UV8b_5383
Transcription initiation factor TFIID subunit 12.
   
 0.978
UV8b_1852
Transcription initiation factor TFIID complex 60 kDa subunit.
    
 0.978
UV8b_2290
Transcription initiation factor tfiid 55 kd subunit.
    
 0.978
UV8b_133
Transcription initiation factor TFIID subunit 11.
    
 0.978
UV8b_3027
TATA binding protein.
   
 0.975
UV8b_3118
Bromodomain associated protein.
    
 0.975
UV8b_2079
Transcription factor TFIID complex subunit Taf111.
    
 0.975
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.