STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6266SAP domain containing protein. (289 aa)    
Predicted Functional Partners:
UV8b_1753
ATP-dependent RNA helicase.
   
 0.984
UV8b_403
Nuclear matrix protein.
    
 0.899
UV8b_5214
Protein mlo3-like protein.
   
 0.869
UV8b_5782
Putative RNA binding protein.
   
 0.869
UV8b_4303
THO complex subunit 7.
   
 0.845
UV8b_2364
Uncharacterized protein.
    
 0.842
UV8b_138
Eukaryotic initiation factor 4A-12; Belongs to the DEAD box helicase family.
   
 0.802
UV8b_2045
ATP-dependent RNA helicase DBP10.
    
 0.721
UV8b_2314
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
    
 0.703
UV8b_2071
RNA-binding protein 8A.
   
 
  0.703
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.