STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6547Cell cycle control protein. (370 aa)    
Predicted Functional Partners:
UV8b_5111
Elongation factor 3.
   
   0.934
UV8b_3514
Putative ribosome assembly protein Noc2.
   
 
 0.907
UV8b_126
RNA helicase.
   
   0.888
UV8b_2066
WD repeat containing protein 36; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.885
UV8b_2013
Electron transfer flavoprotein alpha-subunit.
   
 
 0.880
UV8b_6563
ATP-dependent RNA helicase dbp9.
   
 
 0.866
UV8b_5691
Putative GTP binding protein.
   
 
 0.858
UV8b_4777
Transducin family protein.
   
  
 0.854
UV8b_6549
Cell cycle control protein.
 
 
    0.852
UV8b_6859
Putative ribosome biogenesis protein Ssf2.
   
    0.851
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.