STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6282Uncharacterized protein. (336 aa)    
Predicted Functional Partners:
UV8b_2495
Protein transport protein SEC24.
   
 0.931
UV8b_709
Protein transport protein (SEC31).
   
 0.927
UV8b_202
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 0.921
UV8b_3760
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
   
 0.908
UV8b_2783
GTP-binding protein sar1.
  
 
 0.904
UV8b_8012
Protein transport protein sec22; Belongs to the synaptobrevin family.
   
 0.896
UV8b_2782
GTP-binding protein SAR1.
    
 0.840
UV8b_6370
Sec23/Sec24 family protein.
   
 0.818
UV8b_1932
NIMA-interacting protein TinC.
   
 0.818
UV8b_1931
NIMA-interacting protein TinC.
   
 0.818
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.