STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6055DUF1212 domain membrane protein Prm10. (544 aa)    
Predicted Functional Partners:
UV8b_6056
DUF1212 domain membrane protein Prm10.
 
  
  0.957
UV8b_5122
Synaptobrevin.
    
 0.830
UV8b_2967
Putative plasma membrane SNARE protein (Sec9).
   
 0.790
UV8b_3365
SNARE domain-containing protein.
    
 0.780
UV8b_3016
SNARE domain-containing protein.
    
 0.780
UV8b_1146
BAR domain containing protein.
    
 0.721
UV8b_2773
Sec1 family superfamily; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.702
UV8b_2126
ENTH domain containing protein.
    
 0.684
UV8b_2063
Putative nuclear segregation protein (Bfr1).
    
 0.663
UV8b_5316
AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
    
 0.635
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.