STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_7295Uncharacterized protein. (239 aa)    
Predicted Functional Partners:
UV8b_747
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
   0.969
UV8b_5236
Ribosomal protein S15-like protein.
   
 
 0.949
UV8b_7015
Putative 37S ribosomal protein S18.
   
 
 0.945
UV8b_7514
Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.943
UV8b_4537
37S ribosomal protein MRP4.
   
 
 0.943
UV8b_4394
Superoxide dismutase.
   
 
 0.943
UV8b_676
Putative mitochondral 37S ribosomal protein S27.
   
 
 0.942
UV8b_5029
YmL49.
   
   0.941
UV8b_8165
37S ribosomal protein S11.
   
 
 0.940
UV8b_6973
50S ribosomal protein L24.
   
 
 0.940
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.