STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6071Rieske domain-containing protein. (234 aa)    
Predicted Functional Partners:
UV8b_7232
Ubiquitin.
   
 0.760
UV8b_6594
Prolyl oligopeptidase.
    
 0.739
UV8b_1384
RBR-type E3 ubiquitin transferase.
    
 0.739
UV8b_3217
Polyubiquitin.
    
  0.719
UV8b_4110
AN1-type zinc finger protein.
    
  0.719
UV8b_7670
Ubiquitin.
    
  0.715
UV8b_8385
Uncharacterized protein.
    
  0.715
UV8b_3770
Complex I intermediate-associated protein 30.
    
  0.715
UV8b_5589
Ubiquitin-NEDD8-like protein.
    
  0.713
UV8b_4607
Putative UV excision repair protein (RadW).
    
 0.678
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.