STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5730U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (168 aa)    
Predicted Functional Partners:
UV8b_177
Small nuclear ribonucleoprotein Sm D2.
   
 0.996
UV8b_7969
U1 small nuclear ribonucleoprotein.
   
 0.994
UV8b_1859
Alpha/gamma-adaptin-binding protein p34.
   
 0.993
UV8b_4414
Small nuclear ribonucleoprotein Sm D1.
   
 0.992
UV8b_4745
U2 small nuclear ribonucleoprotein B.
   
 0.990
UV8b_3726
Small nuclear ribonucleoprotein SmF.
   
 0.989
UV8b_966
Amidohydrolase family protein.
   
 0.989
UV8b_3264
U2 small nuclear ribonucleoprotein A.
   
 
 0.987
UV8b_7294
PWI domain-containing protein.
   
 
 0.985
UV8b_4426
U2 snRNP component prp10.
   
 0.983
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.