STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5830UPF0023 family protein. (307 aa)    
Predicted Functional Partners:
UV8b_2811
60S ribosomal protein L37a.
  
   0.941
UV8b_3821
Putative ribosome biogenesis protein Ria1.
  
 
 0.939
UV8b_3819
Putative ribosome biogenesis protein Ria1.
  
 
 0.939
UV8b_3217
Polyubiquitin.
   
 
 0.864
UV8b_4110
AN1-type zinc finger protein.
   
 
 0.864
UV8b_8255
C2H2 type zinc finger containing protein.
   
 
 0.860
UV8b_739
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.813
UV8b_7970
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.803
UV8b_5558
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.802
UV8b_969
40S ribosomal protein S19.
   
 
 0.785
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.