STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_7551Chromatin assembly factor 1 subunit C. (439 aa)    
Predicted Functional Partners:
UV8b_7424
Histone acetyltransferase type B catalytic subunit; Catalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair; Belongs to the HAT1 family.
   
 0.999
UV8b_1309
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.997
UV8b_558
Putative deacetylase complex subunit Sds3.
    
 0.993
UV8b_3200
Putative embryonic ectoderm development protein.
    
 0.986
UV8b_914
Putative enhancer of zeste 2 isoform a.
    
 0.983
UV8b_7535
Histone H3; Belongs to the histone H3 family.
   
 0.982
UV8b_4145
Putative helicase-DNA-binding protein.
   
 0.981
UV8b_3849
SIN3-associated polypeptide sap18.
   
 
 0.980
UV8b_6520
Chromatin remodelling complex ATPase chain ISW1.
   
 0.979
UV8b_2973
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.977
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.