STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6508BCAS2 family protein. (126 aa)    
Predicted Functional Partners:
UV8b_4996
Brix domain-containing protein-like protein.
   
 
 0.800
UV8b_6536
60S ribosomal protein L5.
    
 
 0.789
UV8b_6859
Putative ribosome biogenesis protein Ssf2.
   
    0.740
UV8b_5558
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.694
UV8b_4360
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.686
UV8b_5039
RNA-binding protein of the Puf family,translational repressor.
   
    0.640
UV8b_2409
Periodic tryptophan protein 2.
   
    0.635
UV8b_3514
Putative ribosome assembly protein Noc2.
   
    0.580
UV8b_1728
Curved DNA-binding protein.
   
  
 0.569
UV8b_6166
Putative pre-rRNA processing protein Tsr1.
   
  
 0.568
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.