STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_6741mRNA splicing factor RNA helicase. (1047 aa)    
Predicted Functional Partners:
UV8b_6430
Splicing factor 3b.
   
 0.988
UV8b_1286
Pre-mRNA-splicing factor spp2.
   
 0.984
UV8b_5665
Putative ATP dependent RNA helicase.
   
 
 0.982
UV8b_3888
Pre-mRNA splicing factor SYF1.
   
 0.982
UV8b_332
Pre-mRNA splicing factor CEF1.
 
 
 0.982
UV8b_3848
Pre-mRNA processing splicing factor 8.
   
 
 0.981
UV8b_2600
Putative mRNA splicing factor (Prp17).
   
 0.979
UV8b_1570
Pre-mRNA splicing factor cwc24.
    
 0.978
UV8b_4776
Pre-mRNA splicing factor ATP-dependent RNA helicase prp16.
  
 
0.977
UV8b_4426
U2 snRNP component prp10.
   
 0.975
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.