STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5348Transcription initiation protein. (501 aa)    
Predicted Functional Partners:
UV8b_3027
TATA binding protein.
   
 0.999
UV8b_941
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.994
UV8b_5587
Transcription initiation factor iif.
    
 0.993
UV8b_2062
DNA-directed RNA polymerases II 24 kDa polypeptide.
    
 0.992
UV8b_7135
Serine/threonine-protein kinase; Belongs to the protein kinase superfamily.
   
 0.991
UV8b_6480
Transcription initiation factor IIF subunit alpha.
    
 0.990
UV8b_6854
Metallothionein-I gene transcription activator.
   
 0.987
UV8b_2228
RNA polymerase II subunit 3.
    
 0.987
UV8b_353
Transcription factor spTFIIE alpha subunit.
    
 0.987
UV8b_5596
RNA polymerase Rpb4 family protein.
    
 0.986
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.