STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5928CCCH zinc finger domain-containing protein. (725 aa)    
Predicted Functional Partners:
UV8b_3821
Putative ribosome biogenesis protein Ria1.
 
 
    0.749
UV8b_981
Zinc finger domain-containing ccch-type.
   
 
 0.702
UV8b_6523
Putative rrm-type rna binding protein.
    
 
 0.695
UV8b_5927
Elongation factor 2.
 
 
    0.648
UV8b_4302
CCCH zinc finger protein.
    
 
 0.632
UV8b_4569
Uncharacterized protein.
    
 
 0.592
UV8b_3483
ATP-dependent RNA helicase DOB1.
   
 
 0.561
UV8b_7757
Uncharacterized protein.
   
 
 0.518
UV8b_4920
YT521-B-like family protein.
    
 
 0.510
UV8b_4919
YT521-B-like family protein.
    
 
 0.510
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.