STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5751Nucleolar protein. (915 aa)    
Predicted Functional Partners:
UV8b_7578
Nucleolar essential protein 1.
   
 0.999
UV8b_6844
Putative ribosome biogenesis protein Noc4.
   
 0.999
UV8b_6165
Small nucleolar ribonucleoprotein complex subunit.
   
 0.999
UV8b_5335
HEAT repeat protein.
   
 0.999
UV8b_3664
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.999
UV8b_1248
Sas10/Utp3 family protein.
   
 0.999
UV8b_2229
U3 small nucleolar RNA associated protein.
   
 0.999
UV8b_975
Putative rRNA biogenesis protein RRP5.
   
 0.999
UV8b_5176
Small nucleolar ribonucleoprotein complex subunit Utp14, putatrive.
   
 0.998
UV8b_4330
WD domain, G-beta repeat containing protein.
   
 0.998
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.