STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_4787Putative 2-heptaprenyl-1,4-naphthoquinone methyltransferase. (340 aa)    
Predicted Functional Partners:
UV8b_6166
Putative pre-rRNA processing protein Tsr1.
   
  0.708
UV8b_2732
Putative rRNA processing protein Bystin.
   
  0.700
UV8b_2982
Pre-rRNA-processing protein PNO1.
   
  0.693
UV8b_3360
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.688
UV8b_1471
37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
    
 0.688
UV8b_4895
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.687
UV8b_4264
40S ribosomal protein S27.
    
  0.687
UV8b_2906
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.687
UV8b_2676
Low-temperature viability protein ltv1.
   
  0.687
UV8b_1775
MYB DNA-binding domain containing protein.
    
  0.685
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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