STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5504Uncharacterized protein. (500 aa)    
Predicted Functional Partners:
UV8b_3060
Nucleoporin NSP1.
    
 0.804
UV8b_313
Putative chromatin remodeling complex subunit (Arp5); Belongs to the actin family.
    
 0.794
UV8b_311
YL1 nuclear.
    
 0.767
UV8b_2831
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.765
UV8b_665
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
  0.759
UV8b_7845
Actin; Belongs to the actin family.
    
 0.745
UV8b_942
WD domain-containing protein.
    
 0.721
UV8b_5934
Ash2-trithorax family protein.
    
 0.719
UV8b_3010
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.700
UV8b_8269
Nuclear pore complex subunit Nup133.
    
 0.698
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.