STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5677Proteasome regulatory particle subunit Rpt4; Belongs to the AAA ATPase family. (391 aa)    
Predicted Functional Partners:
UV8b_7891
26S proteasome non-ATPase regulatory subunit 12.
   
 0.999
UV8b_7643
Proteasome regulatory particle subunit Rpt2; Belongs to the AAA ATPase family.
  
0.999
UV8b_5339
Proteasome endopeptidase complex.
  
 0.999
UV8b_6333
Proteasome regulatory particle, non-ATPase-like protein.
   
 0.999
UV8b_2117
26S proteasome regulatory subunit.
  
 0.999
UV8b_1497
Proteasome subunit alpha type.
 
 0.999
UV8b_5675
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 0.998
UV8b_5344
26S protease regulatory subunit 7; Belongs to the AAA ATPase family.
  
0.998
UV8b_3894
26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.
  
0.998
UV8b_2565
26S proteasome non-ATPase regulatory subunit 8.
   
 0.998
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.