STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_3481Pentatricopeptide repeat containing protein. (591 aa)    
Predicted Functional Partners:
UV8b_2418
Spindle pole body component.
    
 0.784
UV8b_3061
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.751
UV8b_2175
Spindle pole body component.
    
 0.735
UV8b_6512
Spindle pole body component.
    
 0.723
UV8b_6510
Spindle pole body component.
    
 0.723
UV8b_2134
Spindle pole body component.
    
 0.723
UV8b_2135
DASH complex subunit ASK1.
    
 0.723
UV8b_1826
Methylcrotonoyl-CoA carboxylase beta chain.
   
 0.711
UV8b_914
Putative enhancer of zeste 2 isoform a.
    
 0.703
UV8b_7535
Histone H3; Belongs to the histone H3 family.
    
 0.659
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.