STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_531360S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family. (663 aa)    
Predicted Functional Partners:
UV8b_8262
60S ribosomal protein L28.
   
 0.999
UV8b_6822
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.999
UV8b_6536
60S ribosomal protein L5.
  
 0.999
UV8b_7599
60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
  
 0.999
UV8b_7751
40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family.
  
 0.999
UV8b_5558
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.999
UV8b_5363
60S ribosomal protein L10-A-like protein.
  
 0.999
UV8b_5015
60S ribosomal protein L9.
  
 0.999
UV8b_5757
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.999
UV8b_5364
60S ribosomal protein L30.
  
 0.999
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.