STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UV8b_5013DNA repair protein rad51. (1162 aa)    
Predicted Functional Partners:
UV8b_8269
Nuclear pore complex subunit Nup133.
  
 0.988
UV8b_3336
Putative nucleoporin SONB.
    
 0.988
UV8b_3760
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.985
UV8b_3010
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.983
UV8b_3060
Nucleoporin NSP1.
    
 0.957
UV8b_1257
Nup188_C domain-containing protein.
   
 0.941
UV8b_7900
Putative nuclear pore protein NUP57.
    
 0.924
UV8b_4113
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
   0.914
UV8b_5012
DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.
 
  
   0.889
UV8b_8340
DNA-directed RNA polymerases I and III 40 kDa polypeptide.
    
 
 0.878
Your Current Organism:
Ustilaginoidea virens
NCBI taxonomy Id: 1159556
Other names: Claviceps virens, MAFF 240994, MAFF 240995, TNS:F-18423, U. virens, Villosiclava virens, Villosiclava virens (Y. Sakurai ex Nakata) E. Tanaka & C. Tanaka 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.